Changes between Version 41 and Version 42 of DeveloperGuide

Timestamp:

02/03/13 15:33:07 (12 years ago)

Author:

Jonathan

Comment:

—

DeveloperGuide

@@ -5 +5 @@
 == Chapter 1. The structure of AstroBEAR ==  
 
+   [AstroBearDetails An introduction to AstroBEAR 2.0]
+
    [DirectoryBreakdown Explanation of how modules are organized]
 
    [UsingDoxygen Using Doxygen to view and create documentation within AstroBEAR]
 
-== Chapter 2. The AMR Engine in AstroBEAR ==
+== Chapter 2. The Adaptive Mesh Refinement Engine in AstroBEAR ==
+
+   [AmrExplained Some basic AMR terminology and concepts]
+
+   [AstroBearAmr The AMR implementation in AstroBEAR]
 
 == Chapter 3. Communication in AstroBEAR ==
 
+   [ScramblerComms How Scrambler schedules and performs communication]
+
 == Chapter 4. Parallelism ==
 
-   [LoadBalancing Load Balancing]
+   [DistributedTree How Scrambler manages the distributed tree]
 
-   [LevelThreading Threading of Level advances]
+   [DistributedControl How Scrambler manages the distributed control]
+
+   [LoadBalancing How Scrambler balances the work load]
+
+   [ScramblerThreading How Scrambler handles threading]
+
+   [ScramblerScheduling How Scrambler handles Scheduling for PseudoThreading]
 
 
 == Chapter 5. Objects in AstroBEAR ==
+
+   [AstroBearObjects Objects in AstroBear]
+
+   [AstroBearObjectTracers Tracers in Objects]
+
    [DevelopingInitialConditionObjects Initial Condition Objects]
 
@@ -33 +52 @@
    [MusclScheme The Muscl Scheme for Split advances]
 
+   [IntegrationScheme A brief overview of the numerical integration options in AstroBEAR]
+   [ConstrainedTransport How magnetic fields are handled]
+
+   [DissipationMethods Information about additional dissipation mechanisms useful for higher order schemes]
+
+
 == Chapter 7. The !Elliptic/Parabolic Solvers ==
+   [LinearSystems Discretizing elliptic equations on an AMR mesh]
 
-   [SelfGravity The self gravity solver]
+   [wiki:Hypre Hypre Explained]
+
+   [http://www.pas.rochester.edu/~bshroyer/hypre_presentation.pdf A code-centric presentation on Hypre]
+
+   [SelfGravity Page describing algorithm for implementing self gravity]
 
    [ThermalConduction The thermal conduction solver]
 
-== Chapter 8. Lagrangian Particles in AstroBEAR ==
+== Chapter 8. Source Terms in AstroBEAR ==
 
-== Chapter 9. IO ==
+   [wiki:CodeExplanation/SourceTerms SourceTerms The main page on how source terms are implemented in AstroBEAR (under construction)]
+
+   [wiki:CodeExplanation/CoolingSchemes A discussion on methods of handling (simple) cooling functions.]
+
+   [CoolingRoutines Description of the non-equilibrium cooling functions.]
+
+
+== Chapter 9. Lagrangian Particles in AstroBEAR ==
+
+   [SinkParticles Information about AstroBEAR's particle algorithm.]
+== Chapter 10. IO ==
+
+== Chapter 11. Special Topics ==
+
+  [OptimizingScrambler Performance issues related to Scrambler]
+
+  [BreakDown How processors spend their time]
+
+  [ShellScheme Implementation of shell algorithm]
+
+  [ScanScheme Implementation of scan algorithm]
+
+  [GhostCells Managing ghost cells]
+
+  [ComputationalStencils Computational Stencils]
+
+  [SuperGrids Super Gridding]
+
+== Chapter 12. Legacy documentation ==
+  [BearclawDoc Though much of it is legacy (last update: 09/2007), Brandon's collection of pages on AstroBEAR (nee Bearclaw) still has good information and should be updated and dispersed through the wiki.]
+
+  [BearclawOutline The original doxygen-like effort. All hand crafted from the finest ones and zeroes.]
+
+
 
 
@@ -51 +114 @@
 
 == AstroBEAR Code Topics ==
-
- * '''[AstroBearDetails Introducing AstroBEAR 2.0]'''
-
- * '''[CodeExplanation How AstroBEAR Works]'''
 
  * '''[AstroBearTesting Testing]'''