1 | | Last login: Tue Nov 28 16:57:47 on ttys000 |
2 | | efogerty@pn1716076:~$ bluehive |
3 | | ekamins2@bluehive.circ.rochester.edu's password: |
4 | | Last login: Tue Nov 28 18:58:08 2017 from vpn13-124.net.rochester.edu |
5 | | Filesystem GB used GB soft limit GB hard limit status |
6 | | /home 2.38 20.00 25.00 under soft limit |
7 | | /scratch 15.14 200.00 1000.00 under soft limit |
8 | | [ekamins2@bluehive ~]$ scr |
9 | | -bash: scr: command not found |
10 | | [ekamins2@bluehive ~]$ scratch |
11 | | [ekamins2@bluehive ekamins2]$ cd sodtest/ |
12 | | [ekamins2@bluehive sodtest]$ ls |
13 | | astrobear frame.data global.data~ physics.data problem.cpp.f90 problem.data~ problem.o scales.data solver.data testrun.s testrun.s.bs |
14 | | astrobear_test global.data out physics.data~ problem.data problem.f90 README scaling_test testprocess.s testrun.s.bh testrun.s.q |
15 | | [ekamins2@bluehive sodtest]$ ./astrobear_test |
16 | | ./astrobear_test: error while loading shared libraries: libhdf5_fortran.so.10: cannot open shared object file: No such file or directory |
17 | | [ekamins2@bluehive sodtest]$ module load astrobear/b1 |
18 | | [ekamins2@bluehive sodtest]$ ./astrobear_test |
19 | | ============================================================================== |
20 | | | _ _ ____ _____ _ ____ ____ ___ | |
21 | | | / \ ___| |_ _ __ ___ | __ )| ____| / \ | _ \ |___ \ / _ \ | |
22 | | | / _ \ / __| __| '__/ _ \| _ \| _| / _ \ | |_) | __) | | | | | | |
23 | | | / ___ \\__ \ |_| | | (_) | |_) | |___ / ___ \| _ < / __/ _| |_| | | |
24 | | | /_/ \_\___/\__|_| \___/|____/|_____/_/ \_\_| \_\ |_____(_)\___/ | |
25 | | | | |
26 | | ============================================================================== |
27 | | Running on 1 cores |
28 | | NrWaves = 0 |
29 | | Initializing Grids on level 0 |
30 | | level -2 |
31 | | level -1 |
32 | | level 0 |
33 | | Time to make output file 0: 0.0127 seconds. |
34 | | data |
35 | | [ekamins2@bluehive sodtest]$ module list |
36 | | Currently Loaded Modulefiles: |
37 | | 1) slurm/16.05.9 3) intel/2017 5) hdf5/1.8.17/b4 7) fftw3/3.3.5/b2 9) astrobear/b1 |
38 | | 2) circ 4) impi/2017 6) hypre/2.11.1/b1 8) pgplot/5.2/b1 |
39 | | [ekamins2@bluehive sodtest]$ ./astrobear_test |
40 | | ============================================================================== |
41 | | | _ _ ____ _____ _ ____ ____ ___ | |
42 | | | / \ ___| |_ _ __ ___ | __ )| ____| / \ | _ \ |___ \ / _ \ | |
43 | | | / _ \ / __| __| '__/ _ \| _ \| _| / _ \ | |_) | __) | | | | | | |
44 | | | / ___ \\__ \ |_| | | (_) | |_) | |___ / ___ \| _ < / __/ _| |_| | | |
45 | | | /_/ \_\___/\__|_| \___/|____/|_____/_/ \_\_| \_\ |_____(_)\___/ | |
46 | | | | |
47 | | ============================================================================== |
48 | | Running on 1 cores |
49 | | NrWaves = 0 |
50 | | Initializing Grids on level 0 |
51 | | level -2 |
52 | | level -1 |
53 | | level 0 |
54 | | Time to make output file 0: 0.0123 seconds. |
55 | | data |
56 | | [ekamins2@bluehive sodtest]$ ls -ltr |
57 | | total 22432 |
58 | | -rwx------ 1 ekamins2 ekamins2 12220816 Nov 20 13:38 astrobear |
59 | | -rw------- 1 ekamins2 ekamins2 8058 Nov 20 13:38 global.data~ |
60 | | -rw------- 1 ekamins2 ekamins2 10062 Nov 20 13:38 physics.data~ |
61 | | -rw------- 1 ekamins2 ekamins2 12220 Nov 20 13:38 problem.cpp.f90 |
62 | | -rw------- 1 ekamins2 ekamins2 12453 Nov 20 13:38 problem.f90 |
63 | | -rw------- 1 ekamins2 ekamins2 101984 Nov 20 13:38 problem.o |
64 | | -rw------- 1 ekamins2 ekamins2 398 Nov 20 13:38 README |
65 | | -rw------- 1 ekamins2 ekamins2 1502 Nov 20 13:38 solver.data |
66 | | -rwx------ 1 ekamins2 ekamins2 1464 Nov 20 13:38 testprocess.s |
67 | | -rwx------ 1 ekamins2 ekamins2 625 Nov 20 13:38 testrun.s |
68 | | -rw------- 1 ekamins2 ekamins2 1761 Nov 20 13:38 testrun.s.bh |
69 | | -rw------- 1 ekamins2 ekamins2 842 Nov 20 13:38 testrun.s.bs |
70 | | -rw------- 1 ekamins2 ekamins2 1763 Nov 20 13:38 testrun.s.q |
71 | | -rw------- 1 ekamins2 ekamins2 8059 Nov 20 14:42 global.data |
72 | | drwx------+ 2 ekamins2 ekamins2 16384 Nov 20 14:43 out |
73 | | -rw------- 1 ekamins2 ekamins2 391 Nov 20 17:43 problem.data~ |
74 | | drwx------+ 3 ekamins2 ekamins2 16384 Nov 20 17:45 scaling_test |
75 | | -rw------- 1 ekamins2 ekamins2 10062 Nov 27 16:19 physics.data |
76 | | -rw------- 1 ekamins2 ekamins2 391 Nov 27 16:26 problem.data |
77 | | -rw------- 1 ekamins2 ekamins2 619 Nov 28 19:16 scales.data |
78 | | -rw------- 1 ekamins2 ekamins2 50 Nov 28 19:16 frame.data |
79 | | -rwx------ 1 ekamins2 ekamins2 12204752 Nov 28 19:22 astrobear_test |
80 | | [ekamins2@bluehive sodtest]$ ./astrobear_test |
81 | | ============================================================================== |
82 | | | _ _ ____ _____ _ ____ ____ ___ | |
83 | | | / \ ___| |_ _ __ ___ | __ )| ____| / \ | _ \ |___ \ / _ \ | |
84 | | | / _ \ / __| __| '__/ _ \| _ \| _| / _ \ | |_) | __) | | | | | | |
85 | | | / ___ \\__ \ |_| | | (_) | |_) | |___ / ___ \| _ < / __/ _| |_| | | |
86 | | | /_/ \_\___/\__|_| \___/|____/|_____/_/ \_\_| \_\ |_____(_)\___/ | |
87 | | | | |
88 | | ============================================================================== |
89 | | Running on 1 cores |
90 | | NrWaves = 0 |
91 | | Initializing Grids on level 0 |
92 | | level -2 |
93 | | level -1 |
94 | | level 0 |
95 | | Time to make output file 0: 0.0132 seconds. |
96 | | data |
97 | | [ekamins2@bluehive sodtest]$ ./astrobear_test |
98 | | ============================================================================== |
99 | | | _ _ ____ _____ _ ____ ____ ___ | |
100 | | | / \ ___| |_ _ __ ___ | __ )| ____| / \ | _ \ |___ \ / _ \ | |
101 | | | / _ \ / __| __| '__/ _ \| _ \| _| / _ \ | |_) | __) | | | | | | |
102 | | | / ___ \\__ \ |_| | | (_) | |_) | |___ / ___ \| _ < / __/ _| |_| | | |
103 | | | /_/ \_\___/\__|_| \___/|____/|_____/_/ \_\_| \_\ |_____(_)\___/ | |
104 | | | | |
105 | | ============================================================================== |
106 | | Running on 1 cores |
107 | | NrWaves = 0 |
108 | | Initializing Grids on level 0 |
109 | | level -2 |
110 | | level -1 |
111 | | level 0 |
112 | | Time to make output file 0: 0.1159 seconds. |
113 | | data |
114 | | [ekamins2@bluehive sodtest]$ ./astrobear_test |
115 | | ============================================================================== |
116 | | | _ _ ____ _____ _ ____ ____ ___ | |
117 | | | / \ ___| |_ _ __ ___ | __ )| ____| / \ | _ \ |___ \ / _ \ | |
118 | | | / _ \ / __| __| '__/ _ \| _ \| _| / _ \ | |_) | __) | | | | | | |
119 | | | / ___ \\__ \ |_| | | (_) | |_) | |___ / ___ \| _ < / __/ _| |_| | | |
120 | | | /_/ \_\___/\__|_| \___/|____/|_____/_/ \_\_| \_\ |_____(_)\___/ | |
121 | | | | |
122 | | ============================================================================== |
123 | | Running on 1 cores |
124 | | NrWaves = 0 |
125 | | Initializing Grids on level 0 |
126 | | level -2 |
127 | | level -1 |
128 | | level 0 |
129 | | Time to make output file 0: 0.0141 seconds. |
130 | | data |
131 | | [ekamins2@bluehive sodtest]$ ls |
132 | | astrobear frame.data global.data~ physics.data problem.cpp.f90 problem.data~ problem.o scales.data solver.data testrun.s testrun.s.bs |
133 | | astrobear_test global.data out physics.data~ problem.data problem.f90 README scaling_test testprocess.s testrun.s.bh testrun.s.q |
134 | | [ekamins2@bluehive sodtest]$ rm astrobear_test |
135 | | [ekamins2@bluehive sodtest]$ ls |
136 | | astrobear frame.data global.data~ physics.data problem.cpp.f90 problem.data~ problem.o scales.data solver.data testrun.s testrun.s.bs |
137 | | astrobear_test global.data out physics.data~ problem.data problem.f90 README scaling_test testprocess.s testrun.s.bh testrun.s.q |
138 | | [ekamins2@bluehive sodtest]$ ./astrobear_test |
139 | | ============================================================================== |
140 | | | _ _ ____ _____ _ ____ ____ ___ | |
141 | | | / \ ___| |_ _ __ ___ | __ )| ____| / \ | _ \ |___ \ / _ \ | |
142 | | | / _ \ / __| __| '__/ _ \| _ \| _| / _ \ | |_) | __) | | | | | | |
143 | | | / ___ \\__ \ |_| | | (_) | |_) | |___ / ___ \| _ < / __/ _| |_| | | |
144 | | | /_/ \_\___/\__|_| \___/|____/|_____/_/ \_\_| \_\ |_____(_)\___/ | |
145 | | | | |
146 | | ============================================================================== |
147 | | Running on 1 cores |
148 | | NrWaves = 0 |
149 | | Initializing Grids on level 0 |
150 | | level -2 |
151 | | level -1 |
152 | | level 0 |
153 | | Time to make output file 0: 0.0081 seconds. |
154 | | data |
155 | | [ekamins2@bluehive sodtest]$ ./astrobear_test |
156 | | ============================================================================== |
157 | | | _ _ ____ _____ _ ____ ____ ___ | |
158 | | | / \ ___| |_ _ __ ___ | __ )| ____| / \ | _ \ |___ \ / _ \ | |
159 | | | / _ \ / __| __| '__/ _ \| _ \| _| / _ \ | |_) | __) | | | | | | |
160 | | | / ___ \\__ \ |_| | | (_) | |_) | |___ / ___ \| _ < / __/ _| |_| | | |
161 | | | /_/ \_\___/\__|_| \___/|____/|_____/_/ \_\_| \_\ |_____(_)\___/ | |
162 | | | | |
163 | | ============================================================================== |
164 | | Running on 1 cores |
165 | | NrWaves = 0 |
166 | | Initializing Grids on level 0 |
167 | | level -2 |
168 | | level -1 |
169 | | level 0 |
170 | | Time to make output file 0: 0.0081 seconds. |
171 | | data |
172 | | [ekamins2@bluehive sodtest]$ ./astrobear_test |
173 | | ============================================================================== |
174 | | | _ _ ____ _____ _ ____ ____ ___ | |
175 | | | / \ ___| |_ _ __ ___ | __ )| ____| / \ | _ \ |___ \ / _ \ | |
176 | | | / _ \ / __| __| '__/ _ \| _ \| _| / _ \ | |_) | __) | | | | | | |
177 | | | / ___ \\__ \ |_| | | (_) | |_) | |___ / ___ \| _ < / __/ _| |_| | | |
178 | | | /_/ \_\___/\__|_| \___/|____/|_____/_/ \_\_| \_\ |_____(_)\___/ | |
179 | | | | |
180 | | ============================================================================== |
181 | | Running on 1 cores |
182 | | NrWaves = 0 |
183 | | Initializing Grids on level 0 |
184 | | level -2 |
185 | | level -1 |
186 | | level 0 |
187 | | Time to make output file 0: 0.0152 seconds. |
188 | | data |
189 | | data |
190 | | [ekamins2@bluehive sodtest]$ packet_write_wait: Connection to 128.151.18.140 port 22: Broken pipe |
191 | | efogerty@pn1716076:~$ bluehive |
192 | | ekamins2@bluehive.circ.rochester.edu's password: |
193 | | Last login: Wed Nov 29 12:41:56 2017 from vpn13-124.net.rochester.edu |
194 | | Filesystem GB used GB soft limit GB hard limit status |
195 | | /home 2.38 20.00 25.00 under soft limit |
196 | | /scratch 15.14 200.00 1000.00 under soft limit |
197 | | [ekamins2@bluehive ~]$ cd astrobear_sodtest/ |
198 | | [ekamins2@bluehive astrobear_sodtest]$ ls |
199 | | bin COPYRIGHT Makefile Makefile.inc makefiles modules README scripts src std.dff std.out TABLES |
200 | | [ekamins2@bluehive astrobear_sodtest]$ cd src/modules/Problem/ |
201 | | [ekamins2@bluehive Problem]$ ls |
202 | | astrobear global.data physics.data problem.cpp.f90 problem.data problem.f90 problem.o README solver.data testprocess.s testrun.s testrun.s.bh testrun.s.bs testrun.s.q |
203 | | [ekamins2@bluehive Problem]$ emacs problem.f90 -nw |
204 | | [ekamins2@bluehive Problem]$ emacs problem.f90 -nw |
205 | | [ekamins2@bluehive Problem]$ emacs problem.f90 -nw |
206 | | [ekamins2@bluehive Problem]$ emacs problem.f90 -nw |
208 | | File Edit Options Buffers Tools F90 Help |
| 2 | |
| 3 | SUBROUTINE ProblemAfterStep(Info) |
| 4 | TYPE(InfoDef) :: Info |
| 5 | INTEGER :: i |
| 6 | REAL(KIND=qPREC), ALLOCATABLE, DIMENSION(:,:) :: qExact |
| 7 | REAL(KIND=qPREC) :: um, s, max_speed |
| 8 | REAL(KIND=qPREC), ALLOCATABLE, DIMENSION(:) :: wmiddle |
| 9 | CHARACTER(50) :: S_FILENAME |
| 10 | |
| 11 | IF (MPI_ID == MASTER .OR. lParallelHDF5) THEN |
| 12 | !write(*,*) 'levels%tnow=', levels(maxlevel)%step |
| 13 | WRITE(s_filename, '(A8,I5.5,A6)') 'out/data', current_frame, '.curve' !write to the character var 's_filename' the concatenated output list |
| 14 | !PRINT *, 's_filename=', s_filename |
| 15 | !PRINT *, 'current_time=', levels(maxlevel)%tnow !gives the current time |
| 16 | !RETURN |
| 17 | OPEN(UNIT=11, FILE=s_filename, status='replace') !open the filename defined above for each current frame |
| 18 | write(11, *) '# rho' |
| 19 | DO i=1, Info%mX(1) |
| 20 | IF (Info%mX(2) /= Info%mX(1)) write(11,*) Info%xbounds(1,1)+(REAL(i)-half)*levels(Info%level)%dx, Info%q(i,1,1,1) |
| 21 | IF (Info%mX(1)==Info%mX(2)) write(11,*) Info%xbounds(1,1)+(REAL(i)-half)*levels(Info%level)%dx*sqrt(2d0), Info%q(i,i,1,1) |
| 22 | END DO |
| 23 | write(11,*) |
| 24 | write(11,*) |
| 25 | write(11,*) '# vx' |
| 26 | DO i=1, Info%mX(1) |
| 27 | IF (Info%mX(2) /= Info%mX(1)) write(11,*) Info%xbounds(1,1)+(REAL(i)-half)*levels(Info%level)%dx, Info%q(i,1,1,ivx)/Info%q(i,1,1,1) |
| 28 | IF (Info%mX(1)==Info%mX(2)) write(11,*) Info%xbounds(1,1)+(REAL(i)-half)*levels(Info%level)%dx*sqrt(2d0), Info%q(i,i,1,ivx)/Info%q(i,i,1,1) |
| 29 | END DO |
| 30 | write(11,*) |
| 31 | write(11,*) |
| 32 | write(11,*) '# P' |
| 33 | DO i=1, Info%mX(1) |
| 34 | IF (Info%mX(2) /= Info%mX(1)) write(11,*) Info%xbounds(1,1)+(REAL(i)-half)*levels(Info%level)%dx, (Press(Info%q(i,1,1,:))) |
| 35 | IF (Info%mX(1)==Info%mX(2)) write(11,*) Info%xbounds(1,1)+(REAL(i)-half)*levels(Info%level)%dx*sqrt(2d0), (Press(Info%q(i,i,1,:))) |
| 36 | END DO |
| 37 | write(11,*) |
| 38 | write(11,*) |
| 39 | |
| 40 | IF (lMHD) THEN |
| 41 | write(11,*) '# vy' |
| 42 | DO i=1, Info%mX(1) |
| 43 | IF (Info%mX(2) /= Info%mX(1)) write(11,*) Info%xbounds(1,1)+(REAL(i)-half)*levels(Info%level)%dx, Info%q(i,1,1,ivy)/Info%q(i,1,1,1) |
| 44 | IF (Info%mX(1)==Info%mX(2)) write(11,*) Info%xbounds(1,1)+(REAL(i)-half)*levels(Info%level)%dx*sqrt(2d0), Info%q(i,i,1,ivy)/Info%q(i,i,1,1) |
| 45 | END DO |
| 46 | write(11,*) |
| 47 | write(11,*) |
| 48 | write(11,*) '# vz' |